The Snakemake workflow management system is a tool to create reproducible and scalable data analyses and can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition.
Singularity is an open source-based container platform designed for scientific and high-performance computing (HPC) environments. Singularity supports Bring Your Own Environment (BYOE)—where entire Singularity environments can be transported between computational resources (e.g., users’ PCs) with reproducibility.
No license; the below content is available under CC0 general license.
Author: Sateesh Peri
Learning Objectives
Note:
Click on this Binder button to launch a Binder rendered via Jupyter Lab interface preinstalled with conda and Snakemake.
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Click here for local setup instructions.
Requires Administrator privileges for Singularity installation.
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