Learning Objective
To run Snakemake jobs via Singularity / Docker containers in the cloud, we recommend Atmosphere, CyVerse’s cloud-computing platform which provides easy-to-use web-access to cloud resources and is designed to accommodate computationally and data-intensive tasks.
The Snakemake2019 image supports: 1) Miniconda3 2) bio-conda 3) Snakemake 4) Singularity 5) Docker
Atmosphere / Jetstream Key Features:
CyVerse is a cyber-infrastructure initiative funded by the National Science Foundation’s Directorate for Biological Sciences to address the growing needs for highly configurable and customized computational infrastructure to support research efforts in data sciences.
Jetstream is an [NSF/XSEDE] resource designed to promote and provide configurable cyberinfrastructure in the form of cloud computing to both novice and experienced users. Jetstream features a web-based user interface based on the popular Atmosphere cloud computing environment developed by CyVerse.